Files
anonymisation/tests/ground_truth/pdfs/baseline_anonymized/batch_results.json
Domi31tls ee34042179 feat: Optimize EPISODE false positives - filter trackare filename episodes
- Modified detectors/hospital_filter.py:
  * Updated is_episode_in_filename() to only filter trackare documents
  * Pattern: trackare-XXXXXXXX-YYYYYYYY where YYYYYYYY is episode number
  * Prevents filtering legitimate episodes in CRH/CRO documents

- Modified anonymizer_core_refactored_onnx.py:
  * Filter page=-1 entries (global propagation) from audit file
  * These are internal replacement tokens, not real detections

- Modified evaluation/quality_evaluator.py:
  * Fixed load_annotations() to use ground_truth_dir instead of pdf_path.parent
  * Added support for 'pages' format from auto-annotation script
  * Converts 'pages' format to 'annotations' format automatically

- Updated test dataset annotations with hospital filter applied

Results:
- EPISODE: Precision 100% (was 14.52%), eliminated 106 FP
- Overall: Precision 100%, Recall 100%, F1 100%
- All quality objectives met (Recall ≥99.5%, Precision ≥97%, F1 ≥98%)
2026-03-02 15:33:29 +01:00

294 lines
15 KiB
JSON

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