"""Setup configuration for OMOP CDM 5.4 Data Pipeline."""

from setuptools import setup, find_packages

with open("README.md", "r", encoding="utf-8") as fh:
    long_description = fh.read()

setup(
    name="omop-pipeline",
    version="0.1.0",
    author="OMOP Pipeline Team",
    description="ETL pipeline for transforming healthcare data to OMOP CDM 5.4 format",
    long_description=long_description,
    long_description_content_type="text/markdown",
    url="https://github.com/yourusername/omop-pipeline",
    packages=find_packages(where="src"),
    package_dir={"": "src"},
    classifiers=[
        "Development Status :: 3 - Alpha",
        "Intended Audience :: Healthcare Industry",
        "Topic :: Scientific/Engineering :: Medical Science Apps.",
        "License :: OSI Approved :: MIT License",
        "Programming Language :: Python :: 3",
        "Programming Language :: Python :: 3.12",
    ],
    python_requires=">=3.12",
    install_requires=[
        "psycopg2-binary>=2.9.9",
        "SQLAlchemy>=2.0.23",
        "pydantic>=2.5.0",
        "PyYAML>=6.0.1",
        "python-dotenv>=1.0.0",
        "click>=8.1.7",
        "tqdm>=4.66.1",
        "pandas>=2.1.4",
        "numpy>=1.26.2",
        "tenacity>=8.2.3",
    ],
    extras_require={
        "dev": [
            "pytest>=7.4.3",
            "pytest-cov>=4.1.0",
            "pytest-asyncio>=0.21.1",
            "hypothesis>=6.92.1",
            "black>=23.12.0",
            "flake8>=6.1.0",
            "mypy>=1.7.1",
            "isort>=5.13.2",
        ],
        "test": [
            "pytest>=7.4.3",
            "pytest-cov>=4.1.0",
            "hypothesis>=6.92.1",
            "faker>=21.0.0",
        ],
    },
    entry_points={
        "console_scripts": [
            "omop-pipeline=src.cli.commands:main",
        ],
    },
)