Initial commit

omop/setup.py

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+"""Setup configuration for OMOP CDM 5.4 Data Pipeline."""
+
+from setuptools import setup, find_packages
+
+with open("README.md", "r", encoding="utf-8") as fh:
+    long_description = fh.read()
+
+setup(
+    name="omop-pipeline",
+    version="0.1.0",
+    author="OMOP Pipeline Team",
+    description="ETL pipeline for transforming healthcare data to OMOP CDM 5.4 format",
+    long_description=long_description,
+    long_description_content_type="text/markdown",
+    url="https://github.com/yourusername/omop-pipeline",
+    packages=find_packages(where="src"),
+    package_dir={"": "src"},
+    classifiers=[
+        "Development Status :: 3 - Alpha",
+        "Intended Audience :: Healthcare Industry",
+        "Topic :: Scientific/Engineering :: Medical Science Apps.",
+        "License :: OSI Approved :: MIT License",
+        "Programming Language :: Python :: 3",
+        "Programming Language :: Python :: 3.12",
+    ],
+    python_requires=">=3.12",
+    install_requires=[
+        "psycopg2-binary>=2.9.9",
+        "SQLAlchemy>=2.0.23",
+        "pydantic>=2.5.0",
+        "PyYAML>=6.0.1",
+        "python-dotenv>=1.0.0",
+        "click>=8.1.7",
+        "tqdm>=4.66.1",
+        "pandas>=2.1.4",
+        "numpy>=1.26.2",
+        "tenacity>=8.2.3",
+    ],
+    extras_require={
+        "dev": [
+            "pytest>=7.4.3",
+            "pytest-cov>=4.1.0",
+            "pytest-asyncio>=0.21.1",
+            "hypothesis>=6.92.1",
+            "black>=23.12.0",
+            "flake8>=6.1.0",
+            "mypy>=1.7.1",
+            "isort>=5.13.2",
+        ],
+        "test": [
+            "pytest>=7.4.3",
+            "pytest-cov>=4.1.0",
+            "hypothesis>=6.92.1",
+            "faker>=21.0.0",
+        ],
+    },
+    entry_points={
+        "console_scripts": [
+            "omop-pipeline=src.cli.commands:main",
+        ],
+    },
+)