Initial commit

This commit is contained in:
Dom
2026-03-05 01:20:15 +01:00
commit c0c50e56f0
364 changed files with 62207 additions and 0 deletions

20
omop/.env.example Normal file
View File

@@ -0,0 +1,20 @@
# OMOP Pipeline Environment Variables
# Copy this file to .env and fill in your values
# Database credentials
OMOP_DB_PASSWORD=your_password_here
OMOP_DB_HOST=localhost
OMOP_DB_PORT=5432
OMOP_DB_NAME=omop_cdm
OMOP_DB_USER=dom
# Logging
LOG_LEVEL=INFO
# Performance
NUM_WORKERS=8
BATCH_SIZE=1000
# Paths
VOCAB_PATH=/path/to/omop/vocabularies
DATA_PATH=/path/to/source/data